PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635803.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LSD
Protein Properties Length: 191aa    MW: 20208.4 Da    PI: 8.6209
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1512.3e-16731125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr++L+YPrGA++VRCalC+ V
  XP_013635803.1  7 CHGCRNTLMYPRGATNVRCALCHIV 31
                    ***********************98 PP

2zf-LSD147.92.1e-155781125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrt+L+Y+rGA+sVRC++C+tV
  XP_013635803.1 57 CGGCRTMLMYTRGASSVRCSCCQTV 81
                    ************************9 PP

3zf-LSD149.28.3e-1698122125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Crt+L+YP+GA+sV+Ca+C++V
  XP_013635803.1  98 CGNCRTTLMYPYGASSVKCAVCQFV 122
                     ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.3E-17434IPR005735Zinc finger, LSD1-type
PfamPF069434.3E-13731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.5E-195484IPR005735Zinc finger, LSD1-type
PfamPF069439.1E-135781IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.2E-1495125IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-1498122IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQDQLVCHGC RNTLMYPRGA TNVRCALCHI VNMVPLHPHP PPPPPPHHGM DMAHIVCGGC  60
RTMLMYTRGA SSVRCSCCQT VNLVPGPPPS NQVAHINCGN CRTTLMYPYG ASSVKCAVCQ  120
FVTNVNMSNG RVPLASNRPN GTAAPGTMPS TSTQSTPPSQ TQTVVVENPM SVNESGKLVS  180
NVVVGVTTGQ K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4533220.0AF453322.1 Brassica oleracea zinc finger protein LSD1 (LSD1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635803.11e-135PREDICTED: protein LSD1 isoform X1
SwissprotP940773e-87LSD1_ARATH; Protein LSD1
TrEMBLA0A078CP611e-123A0A078CP61_BRANA; BnaA01g10580D protein
TrEMBLE2IPA71e-123E2IPA7_BRACM; Zinc finger protein
STRINGBra013460.1-P1e-120(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-85LSD family protein